chore: release v2.3.4

* linting

* adding py.typed

* adding pyyaml types

* workaround #1

* updating latest

* updating dev dependencies

* adding isort mypy safety

* chore: prepare release 2.3.3

.vscode/settings.json

@@ -4,20 +4,5 @@
     "python.linting.enabled": true,
     "python.pythonPath": ".venv/bin/python",
     "restructuredtext.confPath": "${workspaceFolder}/docs/source",
-    "peacock.color": "#307E6A",
+    "peacock.color": "#307E6A"
-    "workbench.colorCustomizations": {
-        "editorGroup.border": "#3ea389",
-        "panel.border": "#3ea389",
-        "sash.hoverBorder": "#3ea389",
-        "sideBar.border": "#3ea389",
-        "statusBar.background": "#307e6a",
-        "statusBar.foreground": "#e7e7e7",
-        "statusBarItem.hoverBackground": "#3ea389",
-        "statusBarItem.remoteBackground": "#307e6a",
-        "statusBarItem.remoteForeground": "#e7e7e7",
-        "titleBar.activeBackground": "#307e6a",
-        "titleBar.activeForeground": "#e7e7e7",
-        "titleBar.inactiveBackground": "#307e6a99",
-        "titleBar.inactiveForeground": "#e7e7e799"
-    }
 }

CHANGELOG.md

@@ -0,0 +1,24 @@
+# Changelog
+
+All notable changes to this project will be documented in this file.
+
+<!-- marker -->
+## [v2.3.4](https://github.com/dtomlinson91/panaetius/commits/v2.3.4) - 2022-01-03
+<small>[Compare with 2.3.3](https://github.com/dtomlinson91/panaetius/compare/2.3.3..v2.3.4)</small>
+
+### Documentation
+
+- Update README.md with script boilerplate ([179007](https://github.com/dtomlinson91/panaetius/commit/1790071741207de13330ba75d7bf090106290d72))
+- Update README.md with script quickstart logging ([e6cfde](https://github.com/dtomlinson91/panaetius/commit/e6cfded87dcfc5d2bf62d36bc7b4dbbdeb94b0b8))
+
+### Features
+
+- Add ability to retrieve keys 3 levels deep ([f5ea19](https://github.com/dtomlinson91/panaetius/commit/f5ea19e7d2f977244594b378c6b7633f02f6048a))
+
+### Testing
+
+- Add tests for f5ea19e ([156af4](https://github.com/dtomlinson91/panaetius/commit/156af4685510bac97a850b83d63f8337635db199))
+
+### Build
+
+- Update dependencies ([9bc89f](https://github.com/dtomlinson91/panaetius/commit/9bc89fd2ce9ddf8dcd6a3ca84ef9b72ee183efd3))

README.md

@@ -32,16 +32,21 @@ See Tembo for an example: <https://github.com/tembo-pages/tembo-core/blob/main/t
 Example snippet to use in a module:
 
 ```python
+"""Subpackage that contains the CLI application."""
+
 import os
+from typing import Any
 
 import panaetius
 from panaetius.exceptions import LoggingDirectoryDoesNotExistException
 
 
 if (config_path := os.environ.get("TEMBO_CONFIG")) is not None:
-    CONFIG = panaetius.Config("tembo", config_path, skip_header_init=True)
+    CONFIG: Any = panaetius.Config("tembo", config_path, skip_header_init=True)
 else:
-    CONFIG = panaetius.Config("tembo", "~/tembo/.config", skip_header_init=True)
+    CONFIG = panaetius.Config(
+        "tembo", "~/tembo/.config", skip_header_init=True
+    )
 
 
 panaetius.set_config(CONFIG, "base_path", "~/tembo")
@@ -73,6 +78,39 @@ import tembo.cli
 tembo.cli.CONFIG
 ```
 
+### Script
+
+Create `./config/config.yml` in the same directory as the script.
+
+In the script initialise a `CONFIG` object:
+
+```python
+import pathlib
+
+import panaetius
+
+CONFIG = panaetius.Config(
+    "teenagers_scraper", str(pathlib.Path(__file__).parents[0] / ".config"), skip_header_init=True
+)
+```
+
+Set variables in the same way as the module above.
+
+#### quickstart logging
+
+```python
+import panaetius
+
+
+def get_logger():
+    logging_dir = pathlib.Path(__file__).parents[0] / "logs"
+    logging_dir.mkdir(parents=True, exist_ok=True)
+
+    CONFIG = panaetius.Config("training_data_into_gcp", skip_header_init=True)
+    panaetius.set_config(CONFIG, "logging.level", "DEBUG")
+    panaetius.set_config(CONFIG, "logging.path", logging_dir)
+    return panaetius.set_logger(CONFIG, panaetius.SimpleLogger(logging_level=CONFIG.logging_level))
+```
 
 ## Utility Functions
 

cliff.toml

@@ -0,0 +1,57 @@
+# configuration file for git-cliff (0.1.0)
+
+[changelog]
+# changelog header
+header = """
+# Changelog
+All notable changes to this project will be documented in this file.\n
+The format is based on [Keep a Changelog](https://keepachangelog.com/en/1.0.0/),
+and this project adheres to [Semantic Versioning](https://semver.org/spec/v2.0.0.html).\n
+"""
+# template for the changelog body
+# https://tera.netlify.app/docs/#introduction
+body = """
+{% if version %}\
+    ## [{{ version }}](https://github.com/dtomlinson91/panaetius/commits/{{ version }}) - {{ timestamp | date(format="%Y-%m-%d") }}
+    {% if previous.version %}\
+    <small>[Compare with {{ previous.version }}](https://github.com/dtomlinson91/panaetius/compare/{{ previous.version }}...{{ version }})</small>
+    {% endif %}\
+{% else %}\
+    ## [unreleased]
+{% endif %}\
+{% for group, commits in commits | group_by(attribute="group") %}
+    ### {{ group | upper_first }}
+    {% for commit in commits %}
+        - {{ commit.message | upper_first }} ([{{ commit.id | truncate(length=6, end="") }}](https://github.com/dtomlinson91/panaetius/commit/{{ commit.id }}))\
+    {% endfor %}
+{% endfor %}\n
+"""
+# remove the leading and trailing whitespaces from the template
+trim = true
+# changelog footer
+footer = """
+"""
+
+[git]
+# allow only conventional commits
+# https://www.conventionalcommits.org
+conventional_commits = true
+# regex for parsing and grouping commits
+commit_parsers = [
+    { message = "^feat", group = "Features"},
+    { message = "^fix", group = "Bug Fixes"},
+    { message = "^doc", group = "Documentation"},
+    { message = "^perf", group = "Performance"},
+    { message = "^refactor", group = "Refactor"},
+    { message = "^style", group = "Styling"},
+    { message = "^test", group = "Testing"},
+    { message = "^chore\\(release\\): prepare for", skip = true},
+    { message = "^chore", group = "Miscellaneous Tasks", skip = true},
+    { body = ".*security", group = "Security"},
+]
+# filter out the commits that are not matched by commit parsers
+filter_commits = false
+# glob pattern for matching git tags
+tag_pattern = "v[0-9]*"
+# regex for skipping tags
+skip_tags = "v0.1.0-beta.1"

docs/Makefile

@@ -1,20 +0,0 @@
-# Minimal makefile for Sphinx documentation
-#
-
-# You can set these variables from the command line, and also
-# from the environment for the first two.
-SPHINXOPTS    ?=
-SPHINXBUILD   ?= sphinx-build
-SOURCEDIR     = source
-BUILDDIR      = build
-
-# Put it first so that "make" without argument is like "make help".
-help:
-	@$(SPHINXBUILD) -M help "$(SOURCEDIR)" "$(BUILDDIR)" $(SPHINXOPTS) $(O)
-
-.PHONY: help Makefile
-
-# Catch-all target: route all unknown targets to Sphinx using the new
-# "make mode" option.  $(O) is meant as a shortcut for $(SPHINXOPTS).
-%: Makefile
-	@$(SPHINXBUILD) -M $@ "$(SOURCEDIR)" "$(BUILDDIR)" $(SPHINXOPTS) $(O)

docs/make.bat

@@ -1,35 +0,0 @@
-@ECHO OFF
-
-pushd %~dp0
-
-REM Command file for Sphinx documentation
-
-if "%SPHINXBUILD%" == "" (
-	set SPHINXBUILD=sphinx-build
-)
-set SOURCEDIR=source
-set BUILDDIR=build
-
-if "%1" == "" goto help
-
-%SPHINXBUILD% >NUL 2>NUL
-if errorlevel 9009 (
-	echo.
-	echo.The 'sphinx-build' command was not found. Make sure you have Sphinx
-	echo.installed, then set the SPHINXBUILD environment variable to point
-	echo.to the full path of the 'sphinx-build' executable. Alternatively you
-	echo.may add the Sphinx directory to PATH.
-	echo.
-	echo.If you don't have Sphinx installed, grab it from
-	echo.http://sphinx-doc.org/
-	exit /b 1
-)
-
-%SPHINXBUILD% -M %1 %SOURCEDIR% %BUILDDIR% %SPHINXOPTS% %O%
-goto end
-
-:help
-%SPHINXBUILD% -M help %SOURCEDIR% %BUILDDIR% %SPHINXOPTS% %O%
-
-:end
-popd

docs/source/_static/custom.css

@@ -1,87 +0,0 @@
-@import url("css/theme.css");
-
-.modname {
-    font-size: 0.8em;
-    opacity: 0.4;
-}
-.modname::before {
-    content: '- ';
-}
-.title {
-    font-weight: bold;
-    font-size: 1.2em;
-    background-color: #eee;
-    display: block;
-    padding: 1px 5px;
-    border-left: 2px solid #ddd;
-}
-
-/*colour of the text in the toc*/
-.wy-menu-vertical header, .wy-menu-vertical p.caption{
-    color: #b26d46;;
-}
-
-/*colour of the top left header*/
-.wy-side-nav-search{
-    background-color: #31465a;
-}
-
-/*colours of the class definitions*/
-.rst-content dl:not(.docutils) dt{
-    background: #e2d7d1;
-    color: #0b2852;
-    border-top: solid 3px #31465a;
-}
-
-/*colour of the link in the class defintions*/
-.rst-content .viewcode-link, .rst-content .viewcode-back{
-    color: #4b674a;
-}
-
-/*colour of the function definitions*/
-.rst-content dl:not(.docutils) dl dt{
-    border-left: solid 3px #31465a;
-    background: #e2d7d1;
-    color: #0b2852;
-}
-
-/*colour of the link in the function definitions*/
-.rst-content .viewcode-link, .rst-content .viewcode-back{
-    color: #4b674a;
-}
-
-/*edit the width of the body*/
-.wy-nav-content{
-    max-width: 1200px;
-}
-
-/*code example blocks*/
-.rst-content pre.literal-block, .rst-content div[class^="highlight"] pre, .rst-content .linenodiv pre{
-    background: #b4bec8;
-    color: black;
-    /*border-style: solid;*/
-    /*border-width: thin;*/
-}
-
-/*colour of inline code blocks using ``*/
-.rst-content tt.literal, .rst-content tt.literal, .rst-content code.literal{
-    color: #b26d46;
-}
-
-/* Change code blocks font and bump up font size slightly (normally 12px)*/
-.rst-content pre.literal-block, .rst-content div[class^="highlight"] pre, .rst-content .linenodiv pre {
-    font-family: 'Inconsolata', monospace !important;
-    font-size: 14px !important;
-    white-space: pre-wrap;
-}
-
-/* Change code descriptions and literal blocks (inline code via ``) to match the normal font size being used in the sphinx_RTD_theme text  (normally 14px)*/
-.rst-content dl:not(.docutils) tt.descname,.rst-content dl:not(.docutils) tt.descclassname,.rst-content dl:not(.docutils) tt.descname,.rst-content dl:not(.docutils) code.descname,.rst-content dl:not(.docutils) tt.descclassname,.rst-content dl:not(.docutils) code.descclassname, code.docutils {
-    font-family: 'Inconsolata', monospace !important;
-    font-size: 14px !important;
-}
-
-/*variables text*/
-dl.class > dd > table.docutils.field-list tbody tr.field-odd.field th.field-name::before{
-    content: '(Class Attributes) ';
-}

docs/source/changelog.rst

@@ -1,17 +0,0 @@
-Version history
-================
-
-1.1
-----
-
-- Adding overwrite to ``__header__`` functionality. See the Configuration documentation page on how to configure.
-
-1.0.2
-------
-
-- Minor fixes and documentation updates.
-
-1.0
---------
-
-- Initial release.

docs/source/conf.py

@@ -1,95 +0,0 @@
-# Configuration file for the Sphinx documentation builder.
-#
-# This file only contains a selection of the most common options. For a full
-# list see the documentation:
-# https://www.sphinx-doc.org/en/master/usage/configuration.html
-
-# -- Path setup --------------------------------------------------------------
-
-# If extensions (or modules to document with autodoc) are in another directory,
-# add these directories to sys.path here. If the directory is relative to the
-# documentation root, use os.path.abspath to make it absolute, like shown here.
-#
-# import os
-# import sys
-# sys.path.insert(0, os.path.abspath('.'))
-import panaetius
-from panaetius.__version__ import __version__ as version
-import sphinx_rtd_theme
-
-# -- Project information -----------------------------------------------------
-
-project = 'panaetius'
-copyright = '2019, Daniel Tomlinson'
-author = 'Daniel Tomlinson'
-
-# The full version, including alpha/beta/rc tags
-release = version
-
-
-# -- General configuration ---------------------------------------------------
-
-# Add any Sphinx extension module names here, as strings. They can be
-# extensions coming with Sphinx (named 'sphinx.ext.*') or your custom
-# ones.
-extensions = [
-    'sphinx.ext.autodoc',
-    'sphinx.ext.viewcode',
-    'sphinx.ext.napoleon',
-    'sphinx.ext.todo',
-]
-
-# -- Napoleon Settings -----------------------------------------------------
-napoleon_google_docstring = False
-napoleon_numpy_docstring = True
-napoleon_include_init_with_doc = True
-napoleon_include_private_with_doc = False
-napoleon_include_special_with_doc = False
-napoleon_use_admonition_for_examples = False
-napoleon_use_admonition_for_notes = False
-napoleon_use_admonition_for_references = False
-napoleon_use_ivar = True
-napoleon_use_param = True
-napoleon_use_rtype = True
-napoleon_use_keyword = True
-autodoc_member_order = 'bysource'
-
-# Add any paths that contain templates here, relative to this directory.
-templates_path = ['_templates']
-
-# The master toctree document.
-master_doc = 'index'
-
-# List of patterns, relative to source directory, that match files and
-# directories to ignore when looking for source files.
-# This pattern also affects html_static_path and html_extra_path.
-exclude_patterns = []
-
-
-# -- Options for HTML output -------------------------------------------------
-
-# The theme to use for HTML and HTML Help pages.  See the documentation for
-# a list of builtin themes.
-#
-html_theme = "sphinx_rtd_theme"
-
-# Add any paths that contain custom static files (such as style sheets) here,
-# relative to this directory. They are copied after the builtin static files,
-# so a file named "default.css" will overwrite the builtin "default.css".
-
-html_theme = "sphinx_rtd_theme"
-html_theme_path = [sphinx_rtd_theme.get_html_theme_path()]
-html_static_path = ['_static']
-html_context = {'css_files': ['_static/custom.css']}
-html_theme_options = {
-    'collapse_navigation': True,
-    'display_version': True,
-    'prev_next_buttons_location': 'both',
-    #'navigation_depth': 3,
-}
-
-# The name of the Pygments (syntax highlighting) style to use.
-pygments_style = 'sphinx'
-
-# Enable todo
-todo_include_todos = True

docs/source/configuration.rst

@@ -1,68 +0,0 @@
-Configuration
-=============
-
-panaetius is fairly easy to configure. There are just a couple of options to be aware of.
-
-Manual configuration of ``Config`` instance
---------------------------------------------
-
-Configuring with a ``__header__.py`` is deprecated. Manually set this value.
-
-Use the following snippet to configure (in ``__init__.py``):
-
-.. code-block:: python
-
-    import panaetius
-    from panaetius.config import Config
-
-    CONFIG = Config(path="~/.config/island-code-extractor", header="island-code-extractor")
-
-    panaetius.set_config(CONFIG, "reddit.secret")
-
-Access this in your code by importing the ``CONFIG`` instance from your module:
-
-.. code-block:: python
-
-    from island_code_extractor import CONFIG
-    from island_code_extractor import panaetius
-
-    CONFIG.reddit_output_path
-    panaetius.logger.info("Using logger")
-
-__header__.py
--------------
-
-You should set a ``__header__.py`` next to your script or module.
-
-This ``__header__.py`` should contain a ``__header__`` variable that sets the name of your project/script.
-
-E.g a ``__header__.py`` for the module ``plex_posters`` would look like:
-
-.. code-block:: python
-
-    __header__ = 'plex_posters' 
-
-Your config file can then be created at ``~/.config/__header__/config.toml``. 
-
-Your environment variables can be created with:
-
-.. code-block:: bash
-
-    HEADER_FOO = "bar"
-    HEADER_SUBSECTION_FOO = "bar"
-
-The headers of the toml file would look like:
-
-.. code-block:: toml
-
-    [__header__]
-    foo = bar
-
-    [__header__.subsection]
-    foo = bar
-
-If you are writing a script, simply place this ``__header__.py`` along side your script. Panaetius will pick this up when the script is ran.
-
-If you are writing a module, you can either place the ``__header__.py`` alongside the script that uses your module. If this is not possible, panaetius will set the default ``__header__`` variable to the name of the virtualenv that the script is activated from.
-
-If neither of the above aren't possible (say your script is running in a lambda on AWS), then ``__header__`` will be set to the default of ``panaetius``.

docs/source/global.rst

@@ -1,5 +0,0 @@
-.. role:: modname
-   :class: modname
-
-.. role:: title
-   :class: title

docs/source/index.rst

@@ -1,3 +0,0 @@
-Table of Contents
-=================
-.. include:: toc.rst

docs/source/introduction.rst

@@ -1,154 +0,0 @@
-Introduction
-=============
-
-.. image:: https://img.shields.io/readthedocs/panaetius?style=for-the-badge   :target: https://panaetius.readthedocs.io/en/latest/?badge=latest
-   :alt: Documentation Status
-
-.. image:: https://img.shields.io/github/v/tag/dtomlinson91/panaetius?style=for-the-badge   :alt: GitHub tag (latest by date)
-
-.. image:: https://img.shields.io/github/commit-activity/m/dtomlinson91/panaetius?style=for-the-badge   :alt: GitHub commit activity
-
-.. image:: https://img.shields.io/github/issues/dtomlinson91/panaetius?style=for-the-badge   :alt: GitHub issues
-
-.. image:: https://img.shields.io/github/license/dtomlinson91/panaetius?style=for-the-badge   :alt: GitHubtbc
-
-Python module to gracefully handle a .config file/environment variables for scripts, with built in masking for sensitive options. Provides a Splunk friendly formatted logger instance.
-
-Usage
-------
-
-Setting a config file
-~~~~~~~~~~~~~~~~~~~~~~
-
-The main functionality of ``panaetius`` is using a config file to store variables.
-
-Your ``config.toml`` can be created and found in ``~/.config/__header__/config.toml`` where ``__header__`` is equal to the variable configured/set. `See how to configure`_ this variable in the configuration section of panaetius.
-
-.. _See how to configure: https://panaetius.readthedocs.io/en/latest/configuration.html#header-py
-
-Setting values in a config.toml/environment variables
-#######################################################
-
-A ``config.toml`` can be created in the default folder for the module. In this example this would be found in ``~/.config/example_module/config.toml``. 
-
-An example ``config.toml`` could look like:
-
-.. code-block:: toml
-
-    [example_module]
-    test = "a6cbf36649b029f3618a0cc1"
-
-    [example_module.logging]
-    path = "~/.config/example_module"
-    level = "DEBUG"
-
-    [example_module.foo]
-    bar = "6b3b96815218960ceaf7cceb"
-
-These are equivalent to the environment variables:
-
-.. code-block:: bash
-
-    EXAMPLE_MODULE_TEST
-    EXAMPLE_MODULE_LOGGING_PATH
-    EXAMPLE_MODULE_LOGGING_LEVEL
-    EXAMPLE_MODULE_FOO_BAR
-
-
-.. Attention:: 
-    Environment variables take precedent over the ``config.toml``. If both are set then the environment variable will be used.
-
-You can overwrite the ``config.toml`` location by setting the environment variable:
-
-.. code-block:: bash
-
-    DEFAULT_CONFIG_PATH = "~/path/to/config"
-
-
-Setting values in your code
-############################
-
-Values in a ``config.toml`` or from an environment variable need to be set in your work in order for you to use them. You can do this easily by
-
-- importing panaetius.
-- using the :func:`~panaetius.library.set_config` function.
-  
-E.g your script could contain:
-
-.. code-block:: python
-
-    import panaetius
-    panaetius.set_config(panaetius.CONFIG, 'logging.path')
-
-.. Note::
-
-    The ``key`` attribute in :func:`~panaetius.library.set_config` is specified as a string, with the hirearchy in the config file split with a ``.``
-
-.. Important::
-
-    The default value for a variable defined using :func:`~panaetius.library.set_config` is ``None``. See the documentation of this function to see all the options available.
-
-
-Accessing values
-#################
-
-You can then access the result of this variable later in your code:
-
-.. code-block:: python
-
-    panaetius.CONFIG.logging_path
-
-
-Logging
-~~~~~~~~
-
-In order to save to disk, you need to specify a path for the log file in the config file/environment variable. There is no need to register this with :func:`~panaetius.library.set_config` as ``panaetius`` will do this automatically.
-
-There are other options available for you to configure a logger. These are (including the default values which can be overwritten):
-
-.. code-block:: toml
-
-    [example_module.logging]
-    backup_count = 3
-    format = "{\n\t"time": "%(asctime)s",\n\t"file_name": "%(filename)s",'
-    '\n\t"module": "%(module)s",\n\t"function":"%(funcName)s",\n\t'
-    '"line_number": "%(lineno)s",\n\t"logging_level":'
-    '"%(levelname)s",\n\t"message": "%(message)s"\n}"
-    level = "INFO" # Level should be in CAPS
-    rotate_bytes = 512000
-
-You can use the logger in your code by:
-
-.. code-block:: python
-
-    panaetius.logger.info('some log message')
-
-which gives an output of:
-
-.. code-block:: json
-
-    {
-        "time": "2020-01-13 23:07:17,913",
-        "file_name": "test.py",
-        "module": "test",
-        "function":"<module>",
-        "line_number": "33",
-        "logging_level":"INFO",
-        "message": "some logging message"
-    }
-
-
-Importing and using the api
-~~~~~~~~~~~~~~~~~~~~~~~~~~~~
-
-See `panaetius api page`_ on how to use and import the module.
-
-.. _panaetius api page: https://panaetius.readthedocs.io/en/latest/modules/panaetius.html
-
-
-Configuration
----------------
-
-See `configuration page`_ on how to configure ``panaetius``.
-
-.. _configuration page: https://panaetius.readthedocs.io/en/latest/configuration.html

docs/source/modules/panaetius.config.rst

@@ -1,9 +0,0 @@
-.. include:: ../global.rst
-
-panaetius.config :modname:`panaetius.config`
----------------------------------------------
-
-.. automodule:: panaetius.config
-   :members:
-   :undoc-members:
-   :show-inheritance:

docs/source/modules/panaetius.config_inst.rst

@@ -1,9 +0,0 @@
-.. include:: ../global.rst
-
-panaetius.config_inst :modname:`panaetius.config_inst`
---------------------------------------------------------
-
-.. automodule:: panaetius.config_inst
-   :members:
-   :undoc-members:
-   :show-inheritance:

docs/source/modules/panaetius.db.rst

@@ -1,9 +0,0 @@
-.. include:: ../global.rst
-
-panaetius.db :modname:`panaetius.db`
--------------------------------------
-
-.. automodule:: panaetius.db
-   :members:
-   :undoc-members:
-   :show-inheritance:

docs/source/modules/panaetius.header.rst

@@ -1,9 +0,0 @@
-.. include:: ../global.rst
-
-panaetius.header :modname:`panaetius.header`
----------------------------------------------
-
-.. automodule:: panaetius.header
-   :members:
-   :undoc-members:
-   :show-inheritance:

docs/source/modules/panaetius.library.rst

@@ -1,9 +0,0 @@
-.. include:: ../global.rst
-
-panaetius.library :modname:`panaetius.library`
-------------------------------------------------
-
-.. automodule:: panaetius.library
-   :members:
-   :undoc-members:
-   :show-inheritance:

docs/source/modules/panaetius.logging.rst

@@ -1,9 +0,0 @@
-.. include:: ../global.rst
-
-panaetius.logging :modname:`panaetius.logging`
-----------------------------------------------
-
-.. automodule:: panaetius.logging
-   :members:
-   :undoc-members:
-   :show-inheritance:

docs/source/modules/panaetius.rst

@@ -1,66 +0,0 @@
-.. include:: ../global.rst
-
-*********
-panaetius
-*********
-
-API
-===
-
-The following is availble by importing the module:
-
-.. code-block:: python
-
-    import panaetius
-
-
-panaetius.CONFIG
-----------------
-
-:obj:`panaetius.CONFIG` provides an instance of :class:`panaetius.config.Config`
-
-
-panaetius.set_config()
------------------------
-
-Conveniently provides :func:`panaetius.library.set_config` 
-
-Use in your module/script with:
-
-.. code-block:: python
-
-    panaetius.set_config(panaetius.CONFIG, 'aws.secret_key', str, mask=True)    
-
-
-panaetius.CONFIG.aws_secret_key
--------------------------------
-
-Conveniently provides access to all attributes that have been declared with :func:`panaetius.library.set_config`:
-
-.. code-block:: python
-
-    my_secret_key = panaetius.CONFIG.aws_secret_key
-
-
-panaetius.logger
------------------
-
-:obj:`panaetius.logger` provides a logger instance already formatted with a nice json output.
-
-.. code-block:: python
-
-    panaetius.logger.info('some logging message')
-
-This gives a logger output of:
-
-.. code-block:: json
-
-    {
-        "time": "2020-01-13 23:07:17,913",
-        "file_name": "test.py",
-        "module": "test",
-        "function":"<module>",
-        "line_number": "33",
-        "logging_level":"INFO",
-        "message": "some logging message"
-    }

docs/source/toc.rst

@@ -1,27 +0,0 @@
-.. toctree::
-   :maxdepth: 1
-   :caption: Overview
-   :titlesonly:
-
-   introduction
-   configuration
-   changelog
-
-.. toctree::
-   :maxdepth: 4
-   :caption: Modules
-   :titlesonly:
-
-   modules/panaetius.rst
-
-.. toctree::
-   :maxdepth: 4
-   :caption: Submodules
-   :titlesonly:
-
-   modules/panaetius.config.rst
-   modules/panaetius.config_inst.rst
-   modules/panaetius.db.rst
-   modules/panaetius.header.rst
-   modules/panaetius.library.rst
-   modules/panaetius.logging.rst

duties.py

@@ -1,21 +1,31 @@
 from __future__ import annotations
 
+import importlib
 import os
 import pathlib
 import re
 import shutil
+import sys
+from io import StringIO
+from typing import List, Optional, Pattern
+from urllib.request import urlopen
 
 from duty import duty
 
-
 PACKAGE_NAME = "panaetius"
+REPO_URL = "https://github.com/dtomlinson91/panaetius"
 
 
-@duty
+@duty(post=["export"])
 def update_deps(ctx, dry: bool = False):
     """
     Update the dependencies using Poetry.
 
+    Args:
+        ctx: The context instance (passed automatically).
+        dry (bool, optional) = If True will update the `poetry.lock` without updating the
+            dependencies themselves. Defaults to False.
+
     Example:
         `duty update_deps dry=False`
     """
@@ -28,39 +38,52 @@ def update_deps(ctx, dry: bool = False):
 
 @duty
 def test(ctx):
-    """Run tests using pytest"""
+    """
-    pytest_results = ctx.run(["pytest", "-v"])
+    Run tests using pytest.
+
+    Args:
+        ctx: The context instance (passed automatically).
+    """
+    pytest_results = ctx.run(["pytest", "-v"], pty=True)
     print(pytest_results)
 
 
 @duty
 def coverage(ctx):
     """
-    Generate a coverage HTML report.
+    Generate a coverage report and save to XML and HTML.
+
+    Args:
+        ctx: The context instance (passed automatically).
 
     Example:
         `duty coverage`
     """
     ctx.run(["coverage", "run", "--source", PACKAGE_NAME, "-m", "pytest"])
+    res = ctx.run(["coverage", "report"], pty=True)
+    print(res)
     ctx.run(["coverage", "html"])
+    ctx.run(["coverage", "xml"])
 
 
 @duty
-def version(ctx, bump: str = "patch"):
+def bump(ctx, version: str = "patch"):
     """
     Bump the version using Poetry and update _version.py.
 
+    This duty is ran as part of `duty release`.
+
     Args:
-        bump (str, optional) = poetry version flag. Available options are:
+        ctx: The context instance (passed automatically).
-            patch, minor, major, prepatch, preminor, premajor, prerelease.
+        version (str, optional) = poetry version flag. Available options are:
-            Defaults to patch.
+            patch, minor, major. Defaults to patch.
 
     Example:
-        `duty version bump=major`
+        `duty bump version=major`
     """
 
     # bump with poetry
-    result = ctx.run(["poetry", "version", bump])
+    result = ctx.run(["poetry", "version", version])
     new_version = re.search(r"(?:.*)(?:\s)(\d+\.\d+\.\d+)$", result)
     print(new_version.group(0))
 
@@ -68,8 +91,7 @@ def version(ctx, bump: str = "patch"):
     version_file = pathlib.Path(PACKAGE_NAME) / "_version.py"
     with version_file.open("w", encoding="utf-8") as version_file:
         version_file.write(
-            f'"""Module containing the version of {PACKAGE_NAME}."""\n\n'
+            f'"""Module containing the version of {PACKAGE_NAME}."""\n\n' + f'__version__ = "{new_version.group(1)}"\n'
-            + f'__version__ = "{new_version.group(1)}"\n'
         )
     print(f"Bumped _version.py to {new_version.group(1)}")
 
@@ -77,7 +99,10 @@ def version(ctx, bump: str = "patch"):
 @duty
 def build(ctx):
     """
-    Build with poetry and extract the `setup.py` and copy to project root.
+    Build with poetry and extract the setup.py and copy to project root.
+
+    Args:
+        ctx: The context instance (passed automatically).
 
     Example:
         `duty build`
@@ -101,3 +126,252 @@ def build(ctx):
 
     # cleanup
     shutil.rmtree(extracted_path)
+
+
+@duty
+def release(ctx, version: str = "patch") -> None:
+    """
+    Prepare package for a new release.
+
+    Will run bump, build, export. Manual running of publish is required afterwards.
+
+    Args:
+        ctx: The context instance (passed automatically).
+        version (str): poetry version flag. Available options are: patch, minor, major.
+    """
+    print(ctx.run(["duty", "bump", f"version={version}"]))
+    ctx.run(["duty", "build"])
+    ctx.run(["duty", "export"])
+    print(
+        "✔ Check generated files. Run `duty changelog planned_release= previous_release=` and `duty publish password=`"
+        " when ready to publish."
+    )
+
+
+@duty
+def export(ctx):
+    """
+    Export the dependencies to a requirements.txt file.
+
+    Args:
+        ctx: The context instance (passed automatically).
+
+    Example:
+        `duty export`
+    """
+    requirements_content = ctx.run(
+        [
+            "poetry",
+            "export",
+            "-f",
+            "requirements.txt",
+            "--without-hashes",
+        ]
+    )
+    requirements_dev_content = ctx.run(
+        [
+            "poetry",
+            "export",
+            "-f",
+            "requirements.txt",
+            "--without-hashes",
+            "--dev",
+        ]
+    )
+
+    requirements = pathlib.Path(".") / "requirements.txt"
+    requirements_dev = pathlib.Path(".") / "requirements_dev.txt"
+
+    with requirements.open("w", encoding="utf-8") as req:
+        req.write(requirements_content)
+
+    with requirements_dev.open("w", encoding="utf-8") as req:
+        req.write(requirements_dev_content)
+
+
+@duty
+def publish(ctx, password: str):
+    """
+    Publish the package to pypi.org.
+
+    Args:
+        ctx: The context instance (passed automatically).
+        password (str): pypi.org password.
+
+    Example:
+        `duty publish password=$my_password`
+    """
+    dist_dir = pathlib.Path(".") / "dist"
+    rm_result = rm_tree(dist_dir)
+    print(rm_result)
+
+    publish_result = ctx.run(["poetry", "publish", "-u", "dtomlinson", "-p", password, "--build"])
+    print(publish_result)
+
+
+@duty(silent=True)
+def clean(ctx):
+    """
+    Delete temporary files.
+
+    Args:
+        ctx: The context instance (passed automatically).
+    """
+    ctx.run("rm -rf .mypy_cache")
+    ctx.run("rm -rf .pytest_cache")
+    ctx.run("rm -rf tests/.pytest_cache")
+    ctx.run("rm -rf build")
+    ctx.run("rm -rf dist")
+    ctx.run("rm -rf pip-wheel-metadata")
+    ctx.run("rm -rf site")
+    ctx.run("rm -rf coverage.xml")
+    ctx.run("rm -rf pytest.xml")
+    ctx.run("rm -rf htmlcov")
+    ctx.run("find . -iname '.coverage*' -not -name .coveragerc | xargs rm -rf")
+    ctx.run("find . -type d -name __pycache__ | xargs rm -rf")
+    ctx.run("find . -name '*.rej' -delete")
+
+
+@duty
+def format(ctx):
+    """
+    Format code using Black and isort.
+
+    Args:
+        ctx: The context instance (passed automatically).
+    """
+    res = ctx.run(["black", "--line-length=99", PACKAGE_NAME], pty=True, title="Running Black")
+    print(res)
+
+    res = ctx.run(["isort", PACKAGE_NAME])
+    print(res)
+
+
+@duty(pre=["check_code_quality", "check_types", "check_docs", "check_dependencies"])
+def check(ctx):
+    """
+    Check the code quality, check types, check documentation builds and check dependencies for vulnerabilities.
+
+    Args:
+        ctx: The context instance (passed automatically).
+    """
+
+
+@duty
+def check_code_quality(ctx):
+    """
+    Check the code quality using prospector.
+
+    Args:
+        ctx: The context instance (passed automatically).
+    """
+    ctx.run(["prospector", PACKAGE_NAME], pty=True, title="Checking code quality with prospector")
+
+
+@duty
+def check_types(ctx):
+    """
+    Check the types using mypy.
+
+    Args:
+        ctx: The context instance (passed automatically).
+    """
+    ctx.run(["mypy", PACKAGE_NAME], pty=True, title="Checking types with MyPy")
+
+
+@duty
+def check_docs(ctx):
+    """
+    Check the documentation builds successfully.
+
+    Args:
+        ctx: The context instance (passed automatically).
+    """
+    ctx.run(["mkdocs", "build"], title="Building documentation")
+
+
+@duty
+def check_dependencies(ctx):
+    """
+    Check dependencies with safety for vulnerabilities.
+
+    Args:
+        ctx: The context instance (passed automatically).
+    """
+    for module in sys.modules:
+        if module.startswith("safety.") or module == "safety":
+            del sys.modules[module]
+
+    importlib.invalidate_caches()
+
+    from safety import safety
+    from safety.formatter import report
+    from safety.util import read_requirements
+
+    requirements = ctx.run(
+        "poetry export --dev --without-hashes",
+        title="Exporting dependencies as requirements",
+        allow_overrides=False,
+    )
+
+    def check_vulns():
+        packages = list(read_requirements(StringIO(requirements)))
+        vulns = safety.check(packages=packages, ignore_ids="41002", key="", db_mirror="", cached=False, proxy={})
+        output_report = report(vulns=vulns, full=True, checked_packages=len(packages))
+        print(vulns)
+        if vulns:
+            print(output_report)
+
+    ctx.run(
+        check_vulns,
+        stdin=requirements,
+        title="Checking dependencies",
+        pty=True,
+    )
+
+
+@duty
+def changelog(ctx, planned_release: Optional[str] = None, previous_release: Optional[str] = None):
+    """
+    Generate a changelog with git-cliff.
+
+    Args:
+        ctx: The context instance (passed automatically).
+        planned_release (str, optional): The planned release version. Example: v1.0.2
+        previous_release (str, optional): The previous release version. Example: v1.0.1
+    """
+    generated_changelog: str = ctx.run(["git", "cliff", "-u", "-t", planned_release, "-s", "header"])[:-1]
+    if previous_release is not None:
+        generated_changelog: list = generated_changelog.splitlines()
+        generated_changelog.insert(
+            1,
+            f"<small>[Compare with {previous_release}]({REPO_URL}/compare/{previous_release}..{planned_release})</small>",
+        )
+        generated_changelog: str = "\n".join([line for line in generated_changelog]) + "\n"
+    new_changelog = []
+
+    changelog_file = pathlib.Path(".") / "CHANGELOG.md"
+    with changelog_file.open("r", encoding="utf-8") as changelog_contents:
+        all_lines = changelog_contents.readlines()
+        for line_string in all_lines:
+            regex_string = re.search(r"(<!-- marker -->)", line_string)
+            new_changelog.append(line_string)
+            if isinstance(regex_string, re.Match):
+                new_changelog.append(generated_changelog)
+    with changelog_file.open("w", encoding="utf-8") as changelog_contents:
+        changelog_contents.writelines(new_changelog)
+
+
+def rm_tree(directory: pathlib.Path):
+    """
+    Recursively delete a directory and all its contents.
+
+    Args:
+        directory (pathlib.Path): The directory to delete.
+    """
+    for child in directory.glob("*"):
+        if child.is_file():
+            child.unlink()
+        else:
+            rm_tree(child)
+    directory.rmdir()

panaetius/_version.py

@@ -1,3 +1,3 @@
 """Module containing the version of panaetius."""
 
-__version__ = "2.3.1"
+__version__ = "2.3.4"

panaetius/config.py

@@ -79,9 +79,7 @@ class Config:
         if self.skip_header_init:
             config_file_location = self.config_path / "config.yml"
         else:
-            config_file_location = (
+            config_file_location = self.config_path / self.header_variable / "config.yml"
-                self.config_path / self.header_variable / "config.yml"
-            )
         try:
             with open(config_file_location, "r", encoding="utf-8") as config_file:
                 # return dict(toml.load(config_file))
@@ -149,15 +147,16 @@ class Config:
             if value is not None:
                 return self.__get_config_value_env_var_override(value)
 
-            if len(key.split(".")) > 2:
+            if len(key.split(".")) > 3:
                 raise KeyErrorTooDeepException(
-                    f"Your key of {key} can only be 2 levels deep maximum. "
+                    f"Your key of {key} can only be 3 levels deep maximum."
-                    f"You have {len(key.split('.'))}"
                 )
             if len(key.split(".")) == 1:
                 return self.__get_config_value_key_split_once(key)
             if len(key.split(".")) == 2:
                 return self.__get_config_value_key_split_twice(key)
+            if len(key.split(".")) == 3:
+                return self.__get_config_value_key_split_thrice(key)
             raise KeyError()
 
         except (KeyError, TypeError):
@@ -174,6 +173,10 @@ class Config:
         section, name = key.lower().split(".")
         return self.config[self.header_variable][section][name]
 
+    def __get_config_value_key_split_thrice(self, key: str) -> Any:
+        section, name_0, name_1 = key.lower().split(".")
+        return self.config[self.header_variable][section][name_0][name_1]
+
     def __get_config_value_missing_key_value_is_none(self, default: Any) -> Any:
         return self.__load_default_value(default)
 

panaetius/logging.py

@@ -106,6 +106,11 @@ class LoggingData(metaclass=ABCMeta):
     def format(self) -> str:
         raise NotImplementedError
 
+    @property
+    @abstractmethod
+    def logging_level(self) -> str:
+        raise NotImplementedError
+
     @abstractmethod
     def __init__(self, logging_level: str):
         raise NotImplementedError
@@ -119,8 +124,12 @@ class SimpleLogger(LoggingData):
             '"%(levelname)s",\n\t"message": "%(message)s"\n}',
         )
 
+    @property
+    def logging_level(self) -> str:
+        return self._logging_level
+
     def __init__(self, logging_level: str = "INFO"):
-        self.logging_level = logging_level
+        self._logging_level = logging_level
 
 
 class AdvancedLogger(LoggingData):
@@ -133,8 +142,12 @@ class AdvancedLogger(LoggingData):
             '"%(levelname)s",\n\t"message": "%(message)s"\n}',
         )
 
+    @property
+    def logging_level(self) -> str:
+        return self._logging_level
+
     def __init__(self, logging_level: str = "INFO"):
-        self.logging_level = logging_level
+        self._logging_level = logging_level
 
 
 class CustomLogger(LoggingData):
@@ -142,6 +155,10 @@ class CustomLogger(LoggingData):
     def format(self) -> str:
         return str(self._format)
 
+    @property
+    def logging_level(self) -> str:
+        return self._logging_level
+
     def __init__(self, logging_format: str, logging_level: str = "INFO"):
-        self.logging_level = logging_level
+        self._logging_level = logging_level
         self._format = logging_format

poetry.lock

@@ -15,17 +15,17 @@ tests = ["tox (>=2.6.0)", "pytest (>=3.0.3)", "pytest-cov (>=2.3.1)"]
 
 [[package]]
 name = "astroid"
-version = "2.8.2"
+version = "2.9.1"
 description = "An abstract syntax tree for Python with inference support."
 category = "dev"
 optional = false
-python-versions = "~=3.6"
+python-versions = ">=3.6.2"
 
 [package.dependencies]
 lazy-object-proxy = ">=1.4.0"
-typed-ast = {version = ">=1.4.0,<1.5", markers = "implementation_name == \"cpython\" and python_version < \"3.8\""}
+typed-ast = {version = ">=1.4.0,<2.0", markers = "implementation_name == \"cpython\" and python_version < \"3.8\""}
 typing-extensions = {version = ">=3.10", markers = "python_version < \"3.10\""}
-wrapt = ">=1.11,<1.13"
+wrapt = ">=1.11,<1.14"
 
 [[package]]
 name = "atomicwrites"
@@ -37,21 +37,21 @@ python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*"
 
 [[package]]
 name = "attrs"
-version = "21.2.0"
+version = "21.4.0"
 description = "Classes Without Boilerplate"
 category = "dev"
 optional = false
 python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*, !=3.4.*"
 
 [package.extras]
-dev = ["coverage[toml] (>=5.0.2)", "hypothesis", "pympler", "pytest (>=4.3.0)", "six", "mypy", "pytest-mypy-plugins", "zope.interface", "furo", "sphinx", "sphinx-notfound-page", "pre-commit"]
+dev = ["coverage[toml] (>=5.0.2)", "hypothesis", "pympler", "pytest (>=4.3.0)", "six", "mypy", "pytest-mypy-plugins", "zope.interface", "furo", "sphinx", "sphinx-notfound-page", "pre-commit", "cloudpickle"]
 docs = ["furo", "sphinx", "zope.interface", "sphinx-notfound-page"]
-tests = ["coverage[toml] (>=5.0.2)", "hypothesis", "pympler", "pytest (>=4.3.0)", "six", "mypy", "pytest-mypy-plugins", "zope.interface"]
+tests = ["coverage[toml] (>=5.0.2)", "hypothesis", "pympler", "pytest (>=4.3.0)", "six", "mypy", "pytest-mypy-plugins", "zope.interface", "cloudpickle"]
-tests_no_zope = ["coverage[toml] (>=5.0.2)", "hypothesis", "pympler", "pytest (>=4.3.0)", "six", "mypy", "pytest-mypy-plugins"]
+tests_no_zope = ["coverage[toml] (>=5.0.2)", "hypothesis", "pympler", "pytest (>=4.3.0)", "six", "mypy", "pytest-mypy-plugins", "cloudpickle"]
 
 [[package]]
 name = "bandit"
-version = "1.7.0"
+version = "1.7.1"
 description = "Security oriented static analyser for python code."
 category = "dev"
 optional = false
@@ -61,7 +61,6 @@ python-versions = ">=3.5"
 colorama = {version = ">=0.3.9", markers = "platform_system == \"Windows\""}
 GitPython = ">=1.0.1"
 PyYAML = ">=5.3.1"
-six = ">=1.10.0"
 stevedore = ">=1.20.0"
 
 [[package]]
@@ -72,6 +71,37 @@ category = "dev"
 optional = false
 python-versions = "*"
 
+[[package]]
+name = "certifi"
+version = "2021.10.8"
+description = "Python package for providing Mozilla's CA Bundle."
+category = "dev"
+optional = false
+python-versions = "*"
+
+[[package]]
+name = "charset-normalizer"
+version = "2.0.9"
+description = "The Real First Universal Charset Detector. Open, modern and actively maintained alternative to Chardet."
+category = "dev"
+optional = false
+python-versions = ">=3.5.0"
+
+[package.extras]
+unicode_backport = ["unicodedata2"]
+
+[[package]]
+name = "click"
+version = "8.0.3"
+description = "Composable command line interface toolkit"
+category = "dev"
+optional = false
+python-versions = ">=3.6"
+
+[package.dependencies]
+colorama = {version = "*", markers = "platform_system == \"Windows\""}
+importlib-metadata = {version = "*", markers = "python_version < \"3.8\""}
+
 [[package]]
 name = "colorama"
 version = "0.4.4"
@@ -82,7 +112,7 @@ python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*, !=3.4.*"
 
 [[package]]
 name = "coverage"
-version = "6.0.2"
+version = "6.2"
 description = "Code coverage measurement for Python"
 category = "dev"
 optional = false
@@ -99,6 +129,22 @@ category = "dev"
 optional = false
 python-versions = "*"
 
+[[package]]
+name = "dparse"
+version = "0.5.1"
+description = "A parser for Python dependency files"
+category = "dev"
+optional = false
+python-versions = ">=3.5"
+
+[package.dependencies]
+packaging = "*"
+pyyaml = "*"
+toml = "*"
+
+[package.extras]
+pipenv = ["pipenv"]
+
 [[package]]
 name = "duty"
 version = "0.7.0"
@@ -161,14 +207,14 @@ flake8 = "*"
 
 [[package]]
 name = "gitdb"
-version = "4.0.7"
+version = "4.0.9"
 description = "Git Object Database"
 category = "dev"
 optional = false
-python-versions = ">=3.4"
+python-versions = ">=3.6"
 
 [package.dependencies]
-smmap = ">=3.0.1,<5"
+smmap = ">=3.0.1,<6"
 
 [[package]]
 name = "gitpython"
@@ -182,13 +228,21 @@ python-versions = ">=3.7"
 gitdb = ">=4.0.1,<5"
 typing-extensions = {version = ">=3.7.4.3", markers = "python_version < \"3.10\""}
 
+[[package]]
+name = "idna"
+version = "3.3"
+description = "Internationalized Domain Names in Applications (IDNA)"
+category = "dev"
+optional = false
+python-versions = ">=3.5"
+
 [[package]]
 name = "importlib-metadata"
-version = "4.8.1"
+version = "4.10.0"
 description = "Read metadata from Python packages"
 category = "dev"
 optional = false
-python-versions = ">=3.6"
+python-versions = ">=3.7"
 
 [package.dependencies]
 typing-extensions = {version = ">=3.6.4", markers = "python_version < \"3.8\""}
@@ -197,7 +251,7 @@ zipp = ">=0.5"
 [package.extras]
 docs = ["sphinx", "jaraco.packaging (>=8.2)", "rst.linker (>=1.9)"]
 perf = ["ipython"]
-testing = ["pytest (>=4.6)", "pytest-checkdocs (>=2.4)", "pytest-flake8", "pytest-cov", "pytest-enabler (>=1.0.1)", "packaging", "pep517", "pyfakefs", "flufl.flake8", "pytest-perf (>=0.9.2)", "pytest-black (>=0.3.7)", "pytest-mypy", "importlib-resources (>=1.3)"]
+testing = ["pytest (>=6)", "pytest-checkdocs (>=2.4)", "pytest-flake8", "pytest-cov", "pytest-enabler (>=1.0.1)", "packaging", "pyfakefs", "flufl.flake8", "pytest-perf (>=0.9.2)", "pytest-black (>=0.3.7)", "pytest-mypy", "importlib-resources (>=1.3)"]
 
 [[package]]
 name = "iniconfig"
@@ -209,7 +263,7 @@ python-versions = "*"
 
 [[package]]
 name = "isort"
-version = "5.9.3"
+version = "5.10.1"
 description = "A Python utility / library to sort Python imports."
 category = "dev"
 optional = false
@@ -237,11 +291,11 @@ i18n = ["Babel (>=2.7)"]
 
 [[package]]
 name = "lazy-object-proxy"
-version = "1.6.0"
+version = "1.7.1"
 description = "A fast and thorough lazy object proxy."
 category = "dev"
 optional = false
-python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*, !=3.4.*, !=3.5.*"
+python-versions = ">=3.6"
 
 [[package]]
 name = "markupsafe"
@@ -287,18 +341,18 @@ python-versions = "*"
 
 [[package]]
 name = "packaging"
-version = "21.0"
+version = "21.3"
 description = "Core utilities for Python packages"
 category = "dev"
 optional = false
 python-versions = ">=3.6"
 
 [package.dependencies]
-pyparsing = ">=2.0.2"
+pyparsing = ">=2.0.2,<3.0.5 || >3.0.5"
 
 [[package]]
 name = "pbr"
-version = "5.6.0"
+version = "5.8.0"
 description = "Python Build Reasonableness"
 category = "dev"
 optional = false
@@ -325,11 +379,11 @@ flake8-polyfill = ">=1.0.2,<2"
 
 [[package]]
 name = "platformdirs"
-version = "2.4.0"
+version = "2.4.1"
 description = "A small Python module for determining appropriate platform-specific dirs, e.g. a \"user data dir\"."
 category = "dev"
 optional = false
-python-versions = ">=3.6"
+python-versions = ">=3.7"
 
 [package.extras]
 docs = ["Sphinx (>=4)", "furo (>=2021.7.5b38)", "proselint (>=0.10.2)", "sphinx-autodoc-typehints (>=1.12)"]
@@ -352,7 +406,7 @@ testing = ["pytest", "pytest-benchmark"]
 
 [[package]]
 name = "prospector"
-version = "1.5.1"
+version = "1.5.3.1"
 description = ""
 category = "dev"
 optional = false
@@ -367,7 +421,7 @@ pep8-naming = ">=0.3.3,<=0.10.0"
 pycodestyle = ">=2.6.0,<2.9.0"
 pydocstyle = ">=2.0.0"
 pyflakes = ">=2.2.0,<2.4.0"
-pylint = ">=2.8.3,<3"
+pylint = ">=2.8.3"
 pylint-celery = "0.3"
 pylint-django = ">=2.4.4,<3.0.0"
 pylint-flask = "0.6"
@@ -395,11 +449,11 @@ python-versions = "*"
 
 [[package]]
 name = "py"
-version = "1.10.0"
+version = "1.11.0"
 description = "library with cross-python path, ini-parsing, io, code, log facilities"
 category = "dev"
 optional = false
-python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*"
+python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*, !=3.4.*"
 
 [[package]]
 name = "pycodestyle"
@@ -433,19 +487,19 @@ python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*"
 
 [[package]]
 name = "pylint"
-version = "2.11.1"
+version = "2.12.2"
 description = "python code static checker"
 category = "dev"
 optional = false
-python-versions = "~=3.6"
+python-versions = ">=3.6.2"
 
 [package.dependencies]
-astroid = ">=2.8.0,<2.9"
+astroid = ">=2.9.0,<2.10"
 colorama = {version = "*", markers = "sys_platform == \"win32\""}
 isort = ">=4.2.5,<6"
 mccabe = ">=0.6,<0.7"
 platformdirs = ">=2.2.0"
-toml = ">=0.7.1"
+toml = ">=0.9.2"
 typing-extensions = {version = ">=3.10.0", markers = "python_version < \"3.10\""}
 
 [[package]]
@@ -501,11 +555,14 @@ pylint = ">=1.7"
 
 [[package]]
 name = "pyparsing"
-version = "2.4.7"
+version = "3.0.6"
 description = "Python parsing module"
 category = "dev"
 optional = false
-python-versions = ">=2.6, !=3.0.*, !=3.1.*, !=3.2.*"
+python-versions = ">=3.6"
+
+[package.extras]
+diagrams = ["jinja2", "railroad-diagrams"]
 
 [[package]]
 name = "pytest"
@@ -542,11 +599,11 @@ pytest = ">=2.7.0"
 
 [[package]]
 name = "pytest-forked"
-version = "1.3.0"
+version = "1.4.0"
 description = "run tests in isolated forked subprocesses"
 category = "dev"
 optional = false
-python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*, !=3.4.*"
+python-versions = ">=3.6"
 
 [package.dependencies]
 py = "*"
@@ -554,7 +611,7 @@ pytest = ">=3.10"
 
 [[package]]
 name = "pytest-xdist"
-version = "2.4.0"
+version = "2.5.0"
 description = "pytest xdist plugin for distributed testing and loop-on-failing modes"
 category = "dev"
 optional = false
@@ -562,7 +619,7 @@ python-versions = ">=3.6"
 
 [package.dependencies]
 execnet = ">=1.1"
-pytest = ">=6.0.0"
+pytest = ">=6.2.0"
 pytest-forked = "*"
 
 [package.extras]
@@ -578,6 +635,24 @@ category = "main"
 optional = false
 python-versions = ">=3.6"
 
+[[package]]
+name = "requests"
+version = "2.26.0"
+description = "Python HTTP for Humans."
+category = "dev"
+optional = false
+python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*, !=3.4.*, !=3.5.*"
+
+[package.dependencies]
+certifi = ">=2017.4.17"
+charset-normalizer = {version = ">=2.0.0,<2.1.0", markers = "python_version >= \"3\""}
+idna = {version = ">=2.5,<4", markers = "python_version >= \"3\""}
+urllib3 = ">=1.21.1,<1.27"
+
+[package.extras]
+socks = ["PySocks (>=1.5.6,!=1.5.7)", "win-inet-pton"]
+use_chardet_on_py3 = ["chardet (>=3.0.2,<5)"]
+
 [[package]]
 name = "requirements-detector"
 version = "0.7"
@@ -589,6 +664,20 @@ python-versions = "*"
 [package.dependencies]
 astroid = ">=1.4"
 
+[[package]]
+name = "safety"
+version = "1.10.3"
+description = "Checks installed dependencies for known vulnerabilities."
+category = "dev"
+optional = false
+python-versions = ">=3.5"
+
+[package.dependencies]
+Click = ">=6.0"
+dparse = ">=0.5.1"
+packaging = "*"
+requests = "*"
+
 [[package]]
 name = "setoptconf-tmp"
 version = "0.3.1"
@@ -600,25 +689,17 @@ python-versions = "*"
 [package.extras]
 yaml = ["pyyaml"]
 
-[[package]]
-name = "six"
-version = "1.16.0"
-description = "Python 2 and 3 compatibility utilities"
-category = "dev"
-optional = false
-python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*"
-
 [[package]]
 name = "smmap"
-version = "4.0.0"
+version = "5.0.0"
 description = "A pure Python implementation of a sliding window memory map manager"
 category = "dev"
 optional = false
-python-versions = ">=3.5"
+python-versions = ">=3.6"
 
 [[package]]
 name = "snowballstemmer"
-version = "2.1.0"
+version = "2.2.0"
 description = "This package provides 29 stemmers for 28 languages generated from Snowball algorithms."
 category = "dev"
 optional = false
@@ -626,7 +707,7 @@ python-versions = "*"
 
 [[package]]
 name = "stevedore"
-version = "3.4.0"
+version = "3.5.0"
 description = "Manage dynamic plugins for Python applications"
 category = "dev"
 optional = false
@@ -652,6 +733,14 @@ category = "dev"
 optional = false
 python-versions = "*"
 
+[[package]]
+name = "types-pyyaml"
+version = "6.0.1"
+description = "Typing stubs for PyYAML"
+category = "dev"
+optional = false
+python-versions = "*"
+
 [[package]]
 name = "types-toml"
 version = "0.10.1"
@@ -662,36 +751,49 @@ python-versions = "*"
 
 [[package]]
 name = "typing-extensions"
-version = "3.10.0.2"
+version = "4.0.1"
-description = "Backported and Experimental Type Hints for Python 3.5+"
+description = "Backported and Experimental Type Hints for Python 3.6+"
-category = "dev"
-optional = false
-python-versions = "*"
-
-[[package]]
-name = "wrapt"
-version = "1.12.1"
-description = "Module for decorators, wrappers and monkey patching."
-category = "dev"
-optional = false
-python-versions = "*"
-
-[[package]]
-name = "zipp"
-version = "3.6.0"
-description = "Backport of pathlib-compatible object wrapper for zip files"
 category = "dev"
 optional = false
 python-versions = ">=3.6"
 
+[[package]]
+name = "urllib3"
+version = "1.26.7"
+description = "HTTP library with thread-safe connection pooling, file post, and more."
+category = "dev"
+optional = false
+python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*, !=3.4.*, <4"
+
+[package.extras]
+brotli = ["brotlipy (>=0.6.0)"]
+secure = ["pyOpenSSL (>=0.14)", "cryptography (>=1.3.4)", "idna (>=2.0.0)", "certifi", "ipaddress"]
+socks = ["PySocks (>=1.5.6,!=1.5.7,<2.0)"]
+
+[[package]]
+name = "wrapt"
+version = "1.13.3"
+description = "Module for decorators, wrappers and monkey patching."
+category = "dev"
+optional = false
+python-versions = "!=3.0.*,!=3.1.*,!=3.2.*,!=3.3.*,!=3.4.*,>=2.7"
+
+[[package]]
+name = "zipp"
+version = "3.7.0"
+description = "Backport of pathlib-compatible object wrapper for zip files"
+category = "dev"
+optional = false
+python-versions = ">=3.7"
+
 [package.extras]
 docs = ["sphinx", "jaraco.packaging (>=8.2)", "rst.linker (>=1.9)"]
-testing = ["pytest (>=4.6)", "pytest-checkdocs (>=2.4)", "pytest-flake8", "pytest-cov", "pytest-enabler (>=1.0.1)", "jaraco.itertools", "func-timeout", "pytest-black (>=0.3.7)", "pytest-mypy"]
+testing = ["pytest (>=6)", "pytest-checkdocs (>=2.4)", "pytest-flake8", "pytest-cov", "pytest-enabler (>=1.0.1)", "jaraco.itertools", "func-timeout", "pytest-black (>=0.3.7)", "pytest-mypy"]
 
 [metadata]
 lock-version = "1.1"
 python-versions = "^3.7"
-content-hash = "dcca7e2e7b6854ab40c11f6e3385b08fffb34b874981f1079205855badd7caea"
+content-hash = "e9da2be8225df95a41d2027f5c9cdaa7f744beff549d915d9922d7ddead8dc54"
 
 [metadata.files]
 ansimarkup = [
@@ -699,68 +801,98 @@ ansimarkup = [
     {file = "ansimarkup-1.5.0.tar.gz", hash = "sha256:96c65d75bbed07d3dcbda8dbede8c2252c984f90d0ca07434b88a6bbf345fad3"},
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+    {file = "astroid-2.9.1-py3-none-any.whl", hash = "sha256:bfd6c41149d1a368e9b7d3cc90470528e080efdd57fbc0c95426794e0be91c5b"},
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+    {file = "astroid-2.9.1.tar.gz", hash = "sha256:f973b3622700431b6e8734ce66f6c18503922a13fb8eb8592e78bd4506823efb"},
 ]
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+    {file = "wrapt-1.13.3-cp39-cp39-win32.whl", hash = "sha256:0a017a667d1f7411816e4bf214646d0ad5b1da2c1ea13dec6c162736ff25a374"},
+    {file = "wrapt-1.13.3-cp39-cp39-win_amd64.whl", hash = "sha256:81bd7c90d28a4b2e1df135bfbd7c23aee3050078ca6441bead44c42483f9ebfb"},
+    {file = "wrapt-1.13.3.tar.gz", hash = "sha256:1fea9cd438686e6682271d36f3481a9f3636195578bab9ca3382e2f5f01fc185"},
 ]
 zipp = [
-    {file = "zipp-3.6.0-py3-none-any.whl", hash = "sha256:9fe5ea21568a0a70e50f273397638d39b03353731e6cbbb3fd8502a33fec40bc"},
+    {file = "zipp-3.7.0-py3-none-any.whl", hash = "sha256:b47250dd24f92b7dd6a0a8fc5244da14608f3ca90a5efcd37a3b1642fac9a375"},
-    {file = "zipp-3.6.0.tar.gz", hash = "sha256:71c644c5369f4a6e07636f0aa966270449561fcea2e3d6747b8d23efaa9d7832"},
+    {file = "zipp-3.7.0.tar.gz", hash = "sha256:9f50f446828eb9d45b267433fd3e9da8d801f614129124863f9c51ebceafb87d"},
 ]

pyproject.toml

@@ -1,10 +1,10 @@
 [tool.poetry]
 name = "panaetius"
-version = "2.3.1"
+version = "2.3.4"
 description = "Python module to gracefully handle a .config file/environment variables for scripts, with built in masking for sensitive options. Provides a Splunk friendly formatted logger instance."
 license = "MIT"
 authors = ["dtomlinson <dtomlinson@panaetius.co.uk>"]
-readme = "./README.rst"
+readme = "./README.md"
 homepage = "https://github.com/dtomlinson91/panaetius"
 repository = "https://github.com/dtomlinson91/panaetius"
 documentation = "https://panaetius.readthedocs.io/en/latest/introduction.html"
@@ -35,6 +35,23 @@ pytest-datadir = "^1.3.1"
 pytest-xdist = "^2.4.0"
 coverage = "^6.0.2"
 duty = "^0.7.0"
+types-PyYAML = "^6.0.1"
+isort = "^5.10.1"
+mypy = "^0.910"
+safety = "^1.10.3"
+
+[tool.black]
+line-length = 120
+
+[tool.isort]
+line-length = 120
+not_skip = "__init__.py"
+multi_line_output = 3
+force_single_line = false
+balanced_wrapping = true
+default_section = "THIRDPARTY"
+known_first_party = "duty"
+include_trailing_comma = true
 
 [build-system]
 requires = ["poetry>=0.12"]

requirements.txt

@@ -1,7 +1,2 @@
-pylite==0.1.0 \
+pyyaml==6.0; python_version >= "3.6"
-    --hash=sha256:e338d20d3f8f72dd84d1e58f2fd6dba008d593e0cfacfb5fbdd5a297b830628e \
+toml==0.10.2; (python_version >= "2.6" and python_full_version < "3.0.0") or (python_full_version >= "3.3.0")
-    --hash=sha256:eb46f5beb1f2102672fd4355c013ac2feebc0df284d65f7711f2041a0a410141
-toml==0.10.0 \
-    --hash=sha256:229f81c57791a41d65e399fc06bf0848bab550a9dfd5ed66df18ce5f05e73d5c \
-    --hash=sha256:235682dd292d5899d361a811df37e04a8828a5b1da3115886b73cf81ebc9100e \
-    --hash=sha256:f1db651f9657708513243e61e6cc67d101a39bad662eaa9b5546f789338e07a3

requirements_dev.txt

@@ -0,0 +1,68 @@
+ansimarkup==1.5.0; python_version >= "3.6"
+astroid==2.9.1; python_full_version >= "3.6.2" and python_version < "4.0"
+atomicwrites==1.4.0; python_version >= "3.6" and python_full_version < "3.0.0" and sys_platform == "win32" and (python_version >= "3.6" and python_full_version < "3.0.0" or python_full_version >= "3.4.0" and python_version >= "3.6") or sys_platform == "win32" and python_version >= "3.6" and python_full_version >= "3.4.0" and (python_version >= "3.6" and python_full_version < "3.0.0" or python_full_version >= "3.4.0" and python_version >= "3.6")
+attrs==21.4.0; python_version >= "3.6" and python_full_version < "3.0.0" or python_full_version >= "3.5.0" and python_version >= "3.6"
+bandit==1.7.1; python_full_version >= "3.6.1" and python_version < "4.0" and python_version >= "3.5"
+cached-property==1.5.2; python_version < "3.8" and python_version >= "3.6"
+certifi==2021.10.8; python_version >= "3.5" and python_full_version < "3.0.0" or python_full_version >= "3.6.0" and python_version >= "3.5"
+charset-normalizer==2.0.9; python_full_version >= "3.6.0" and python_version >= "3.5"
+click==8.0.3; python_version >= "3.6"
+colorama==0.4.4; sys_platform == "win32" and python_version >= "3.6" and python_full_version >= "3.6.2" and python_version < "4.0" and platform_system == "Windows" and (python_version >= "3.6" and python_full_version < "3.0.0" or python_full_version >= "3.4.0" and python_version >= "3.6")
+coverage==6.2; python_version >= "3.6"
+dodgy==0.2.1; python_full_version >= "3.6.1" and python_version < "4.0"
+dparse==0.5.1; python_version >= "3.5"
+duty==0.7.0; python_version >= "3.6"
+execnet==1.9.0; python_version >= "3.6" and python_full_version < "3.0.0" or python_full_version >= "3.5.0" and python_version >= "3.6"
+failprint==0.8.0; python_version >= "3.6"
+flake8-polyfill==1.0.2; python_full_version >= "3.6.1" and python_version < "4.0"
+flake8==2.3.0; python_full_version >= "3.6.1" and python_version < "4.0"
+gitdb==4.0.9; python_full_version >= "3.6.1" and python_version < "4.0" and python_version >= "3.7"
+gitpython==3.1.24; python_full_version >= "3.6.1" and python_version < "4.0" and python_version >= "3.7"
+idna==3.3; python_version >= "3.5" and python_full_version < "3.0.0" or python_full_version >= "3.6.0" and python_version >= "3.5"
+importlib-metadata==4.10.0; python_version < "3.8" and python_version >= "3.7" and (python_version >= "3.6" and python_full_version < "3.0.0" or python_full_version >= "3.4.0" and python_version >= "3.6") and python_full_version >= "3.6.1"
+iniconfig==1.1.1; python_version >= "3.6" and python_full_version < "3.0.0" or python_full_version >= "3.4.0" and python_version >= "3.6"
+isort==5.10.1; python_full_version >= "3.6.1" and python_version < "4.0"
+jinja2==3.0.3; python_version >= "3.6"
+lazy-object-proxy==1.7.1; python_full_version >= "3.6.2" and python_version < "4.0" and python_version >= "3.6"
+markupsafe==2.0.1; python_version >= "3.6"
+mccabe==0.6.1; python_full_version >= "3.6.2" and python_version < "4.0"
+mypy-extensions==0.4.3; python_full_version >= "3.6.1" and python_version < "4.0" and python_version >= "3.5"
+mypy==0.910; python_version >= "3.5"
+packaging==21.3; python_version >= "3.6" and python_full_version < "3.0.0" or python_full_version >= "3.4.0" and python_version >= "3.6"
+pbr==5.8.0; python_full_version >= "3.6.1" and python_version < "4.0" and python_version >= "3.6"
+pep8-naming==0.10.0; python_full_version >= "3.6.1" and python_version < "4.0"
+pep8==1.7.1; python_full_version >= "3.6.1" and python_version < "4.0"
+platformdirs==2.4.1; python_full_version >= "3.6.2" and python_version < "4.0" and python_version >= "3.7"
+pluggy==1.0.0; python_version >= "3.6" and python_full_version < "3.0.0" or python_full_version >= "3.4.0" and python_version >= "3.6"
+prospector==1.5.3.1; python_full_version >= "3.6.1" and python_version < "4.0"
+ptyprocess==0.7.0; sys_platform != "win32" and python_version >= "3.6"
+py==1.11.0; python_version >= "3.6" and python_full_version < "3.0.0" or python_full_version >= "3.5.0" and python_version >= "3.6"
+pycodestyle==2.8.0; python_full_version >= "3.6.1" and python_version < "4.0"
+pydocstyle==6.1.1; python_full_version >= "3.6.1" and python_version < "4.0" and python_version >= "3.6"
+pyflakes==2.3.1; python_full_version >= "3.6.1" and python_version < "4.0"
+pylint-celery==0.3; python_full_version >= "3.6.1" and python_version < "4.0"
+pylint-django==2.4.4; python_full_version >= "3.6.1" and python_version < "4.0"
+pylint-flask==0.6; python_full_version >= "3.6.1" and python_version < "4.0"
+pylint-plugin-utils==0.6; python_full_version >= "3.6.1" and python_version < "4.0"
+pylint==2.12.2; python_full_version >= "3.6.2" and python_version < "4.0"
+pyparsing==3.0.6; python_version >= "3.6"
+pytest-datadir==1.3.1; (python_version >= "2.7" and python_full_version < "3.0.0") or (python_full_version >= "3.4.0")
+pytest-forked==1.4.0; python_version >= "3.6"
+pytest-xdist==2.5.0; python_version >= "3.6"
+pytest==6.2.5; python_version >= "3.6"
+pyyaml==6.0; python_version >= "3.6"
+requests==2.26.0; python_version >= "3.5" and python_full_version < "3.0.0" or python_full_version >= "3.6.0" and python_version >= "3.5"
+requirements-detector==0.7; python_full_version >= "3.6.1" and python_version < "4.0"
+safety==1.10.3; python_version >= "3.5"
+setoptconf-tmp==0.3.1; python_full_version >= "3.6.1" and python_version < "4.0"
+smmap==5.0.0; python_full_version >= "3.6.1" and python_version < "4.0" and python_version >= "3.7"
+snowballstemmer==2.2.0; python_full_version >= "3.6.1" and python_version < "4.0" and python_version >= "3.6"
+stevedore==3.5.0; python_full_version >= "3.6.1" and python_version < "4.0" and python_version >= "3.6"
+toml==0.10.2; (python_version >= "2.6" and python_full_version < "3.0.0") or (python_full_version >= "3.3.0")
+typed-ast==1.4.3; python_version < "3.8" and python_version >= "3.5" and python_full_version >= "3.6.2" and implementation_name == "cpython"
+types-pyyaml==6.0.1
+types-toml==0.10.1
+typing-extensions==4.0.1; python_full_version >= "3.6.2" and python_version < "3.8" and python_version >= "3.7"
+urllib3==1.26.7; python_version >= "3.5" and python_full_version < "3.0.0" or python_full_version >= "3.6.0" and python_version < "4" and python_version >= "3.5"
+wrapt==1.13.3; python_full_version >= "3.6.2" and python_version < "4.0"
+zipp==3.7.0; python_version < "3.8" and python_version >= "3.7"

rewrite.todo

@@ -1,56 +0,0 @@
-Testing:
-  To Write:
-    ☐ Document coverage commands
-      `coverage run --source=./panaetius -m pytest`
-      `coverage report` & `coverage html` > gives ./htmlcov/index.html
-Documentation:
-    ☐ Rewrite documentation using `mkdocs` and using `.md`.
-    ☐ Update the metadata in the `pyproject.toml`.
-    ☐ Create a new `Readme.md` and remove the `.rst`.
-    ☐ Document the logging strategy
-      CLI tools should use `logger.critical` and raise SystemExit(1)
-      Libraries should raise custom errors and have a `logger.critical(exec_info=1)`
-Typing:
-  ☐ Go over typing, make sure what's passed in are generics where possible.
-Docstrings:
-  ☐ Update class docstrings so attributes are in class.
-Misc:
-    ☐ Use the python runner to build the docs & run the tests (including coverage html)
-        coverage run -m pytest && coverage report && coverage html
-        ☐ document this in trilium
-
-Archive:
-  ✔ Test the Config file skipping header with `skip_header_init` @done(21-10-25 23:34) @project(Testing.To Write)
-  ✔ Document for abstract methods should raise NotImplementedError @done(21-10-25 23:39) @project(Testing.To Write)
-  ✔ Document https://stackoverflow.com/a/9212387 @done(21-10-25 23:40) @project(Testing.To Write)
-  ✘ Bump the version to release 2.0 @cancelled(21-10-23 05:36) @project(Misc)
-  ✔ Handle if a bool is passed in as a default @done(21-10-16 05:25) @project(Coding.No Config File)
-  ✔ Handle if a bool is passed in as a default @done(21-10-16 05:25) @project(Coding.Config File)
-  ✔ Create SimpleLogger, AdvancedLogger, CustomLogger classes @done(21-10-16 16:22) @project(Coding.Logging)
-  ✔ Logging path should take by default the config path unless overwritten? @done(21-10-16 23:49) @project(Coding.Logging)
-  ✔ Check logging path + config path are valid, if not raise error. @done(21-10-18 00:04) @project(Coding.Errors)
-  ✔ Add tests for these. @done(21-10-18 00:04) @project(Coding.Errors)
-  ✔ Check for a key > 2 levels, raise custom error, write test @done(21-10-17 23:30) @project(Coding.Errors)
-  ✔ Check all functions and annotations. @done(21-10-18 01:07) @project(Coding.Linting)
-  ✔ Write the docstrings for public functions/methods. @done(21-10-18 02:29) @project(Coding.Docstrings)
-  ✔ When both a config file and a env var is found, use the env var. @done(21-10-18 00:38) @project(Coding.Functionality)
-  ✔ If loading from a default, don't covert to TOML @done(21-10-17 20:33) @project(Tests.Bugfixes)
-  ✔ Env Vars should be given as python objects @done(21-10-17 20:33) @project(Tests.Bugfixes)
-    The string or node provided may only consist of the following Python literal structures: strings, bytes, numbers, tuples, lists, dicts, sets, booleans, and None.
-    use ast.literal_eval()
-    https://docs.python.org/3/library/ast.html#ast.literal_eval
-  ✔ Test default config path set to "~/.config" @done(21-10-17 17:25) @project(Tests.__init__)
-  ✔ Test config path is set when passed in @done(21-10-17 17:25) @project(Tests.__init__)
-  ✔ Check testing config file is returned as dict @done(21-10-17 17:25) @project(Tests.config property)
-  ✔ Check _self.missing_config and empty dict is returned @done(21-10-17 17:25) @project(Tests.config property)
-  ✔ Arrays & tables loaded correctly from config file @done(21-10-17 20:34) @project(Tests.get_value.config_file)
-  ✔ test when key length is 1 the value is returned @done(21-10-17 18:55) @project(Tests.get_value.config_file)
-  ✔ test when key length is 2 the value is returned @done(21-10-17 18:55) @project(Tests.get_value.config_file)
-  ✔ test when key not found and no env var default is loaded @done(21-10-17 19:01) @project(Tests.get_value.config_file)
-  ✔ test bool's are properly converted @done(21-10-17 19:01) @project(Tests.get_value.config_file)
-  ✔ test when key not found and env var is set value is loaded @done(21-10-17 20:43) @project(Tests.get_value.config_file)
-  ✔ check if env key is missing the default is read in @done(21-10-17 20:55) @project(Tests.get_value.env_var)
-  ✔ check if env key is present the values are read in @done(21-10-17 22:24) @project(Tests.get_value.env_var)
-  ✔ parametrise a test to read in values form env vars and they're set correctly @done(21-10-17 22:24) @project(Tests.get_value.env_var)
-  ✔ test that the env var is valid python @done(21-10-18 01:03) @project(Tests.get_value.env_var)
-  ✔ test set_config works @done(21-10-17 23:29) @project(Tests.library)

setup.py

@@ -12,9 +12,9 @@ install_requires = \
 
 setup_kwargs = {
     'name': 'panaetius',
-    'version': '2.2.2',
+    'version': '2.3.4',
     'description': 'Python module to gracefully handle a .config file/environment variables for scripts, with built in masking for sensitive options. Provides a Splunk friendly formatted logger instance.',
-    'long_description': 'Author\n=======\n\nDaniel Tomlinson (dtomlinson@panaetius.co.uk)\n\nRequires\n=========\n\n`>= python3.7`\n\nPython requirements\n====================\n\n- toml = "^0.10.0"\n- pylite = "^0.1.0"\n\nDocumentation\n==============\n\nRead the documentation on `read the docs`_.\n\n.. _read the docs: https://panaetius.readthedocs.io/en/latest/introduction.html\n\nInstallation\n==============\n\nYou can install ``panaetius`` the following ways:\n\nPython\n-------\n\n.. Attention:: You should install in a python virtual environment\n\nFrom pypi using pip\n~~~~~~~~~~~~~~~~~~~~\n\n.. code-block:: bash\n\n    pip install panaetius\n\nFrom local wheel\n~~~~~~~~~~~~~~~~~\n\nDownload the latest verion from the `releases`_ page.\n\n.. _releases: https://github.com/dtomlinson91/panaetius/releases\n\nInstall with pip:\n\n.. code-block:: bash\n\n    pip install -U panaetius-1.0.2-py3-none-any.whl\n\n\nFrom source\n~~~~~~~~~~~~\n\nClone the repo and install using ``setup.py``:\n\n.. code-block:: bash\n\n    python setup.py\n',
+    'long_description': '# Panaetius\n\nThis package provides:\n\n- Functionality to read user variables from a `config.yml` or environment variables.\n- A convenient default logging formatter printing `json` that can save to disk and rotate.\n- Utility functions.\n\n## Config\n\n### options\n\n#### skip_header_init\n\nIf `skip_header_init=True` then the `config_path` will not use the `header_variable` as the\nsub-directory in the `config_path`.\n\nE.g\n\n`CONFIG = panaetius.Config("tembo", "~/tembo/.config", skip_header_init=True)`\n\nWill look in `~/tembo/config/config.yml`.\n\nIf `skip_header_init=False` then would look in `~/tembo/config/tembo/config.yml`.\n\n### Module\n\nConvenient to place in a package/sub-package `__init__.py`.\n\nSee Tembo for an example: <https://github.com/tembo-pages/tembo-core/blob/main/tembo/cli/__init__.py>\n\nExample snippet to use in a module:\n\n```python\n"""Subpackage that contains the CLI application."""\n\nimport os\nfrom typing import Any\n\nimport panaetius\nfrom panaetius.exceptions import LoggingDirectoryDoesNotExistException\n\n\nif (config_path := os.environ.get("TEMBO_CONFIG")) is not None:\n    CONFIG: Any = panaetius.Config("tembo", config_path, skip_header_init=True)\nelse:\n    CONFIG = panaetius.Config(\n        "tembo", "~/tembo/.config", skip_header_init=True\n    )\n\n\npanaetius.set_config(CONFIG, "base_path", "~/tembo")\npanaetius.set_config(CONFIG, "template_path", "~/tembo/.templates")\npanaetius.set_config(CONFIG, "scopes", {})\npanaetius.set_config(CONFIG, "logging.level", "DEBUG")\npanaetius.set_config(CONFIG, "logging.path")\n\ntry:\n    logger = panaetius.set_logger(\n        CONFIG, panaetius.SimpleLogger(logging_level=CONFIG.logging_level)\n    )\nexcept LoggingDirectoryDoesNotExistException:\n    _LOGGING_PATH = CONFIG.logging_path\n    CONFIG.logging_path = ""\n    logger = panaetius.set_logger(\n        CONFIG, panaetius.SimpleLogger(logging_level=CONFIG.logging_level)\n    )\n    logger.warning("Logging directory %s does not exist", _LOGGING_PATH)\n\n```\n\nThis means in `./tembo/cli/cli.py` you can\n\n```python\nimport tembo.cli\n\n# access the CONFIG instance + variables from the config.yml\ntembo.cli.CONFIG\n```\n\n### Script\n\nCreate `./config/config.yml` in the same directory as the script.\n\nIn the script initialise a `CONFIG` object:\n\n```python\nimport pathlib\n\nimport panaetius\n\nCONFIG = panaetius.Config(\n    "teenagers_scraper", str(pathlib.Path(__file__).parents[0] / ".config"), skip_header_init=True\n)\n```\n\nSet variables in the same way as the module above.\n\n#### quickstart logging\n\n```python\nimport panaetius\n\n\ndef get_logger():\n    logging_dir = pathlib.Path(__file__).parents[0] / "logs"\n    logging_dir.mkdir(parents=True, exist_ok=True)\n\n    CONFIG = panaetius.Config("training_data_into_gcp", skip_header_init=True)\n    panaetius.set_config(CONFIG, "logging.level", "DEBUG")\n    panaetius.set_config(CONFIG, "logging.path", logging_dir)\n    return panaetius.set_logger(CONFIG, panaetius.SimpleLogger(logging_level=CONFIG.logging_level))\n```\n\n## Utility Functions\n\n### Squasher\n\nSquashes a json object or Python dictionary into a single level dictionary.\n',
     'author': 'dtomlinson',
     'author_email': 'dtomlinson@panaetius.co.uk',
     'maintainer': None,

tests/conftest.py

@@ -18,6 +18,9 @@ def testing_config_contents():
                 "some_second_list": ["some", "second", "value"],
                 "some_second_table": {"first": ["some", "first", "value"]},
                 "some_second_table_bools": {"bool": [True, False]},
+                "third": {
+                    "some_third_string": "some_third_value",
+                },
             },
         }
     }

tests/data/without_logging/panaetius_testing/config.yml

@@ -7,3 +7,5 @@
     some_second_list: ["some", "second", "value"]
     some_second_table: { "first": ["some", "first", "value"] }
     some_second_table_bools: { "bool": [true, false] }
+    third:
+      some_third_string: some_third_value

tests/test_config.py

@@ -67,9 +67,7 @@ def test_config_file_without_header_dir_exists(header, shared_datadir):
     assert config._missing_config is False
 
 
-def test_config_file_contents_read_success(
+def test_config_file_contents_read_success(header, shared_datadir, testing_config_contents):
-    header, shared_datadir, testing_config_contents
-):
     # arrange
     config_path = str(shared_datadir / "without_logging")
 
@@ -101,11 +99,10 @@ def test_config_file_contents_read_success(
             "second_some_second_table_bools",
             {"bool": [True, False]},
         ),
+        ("second.third.some_third_string", "second_third_some_third_string", "some_third_value"),
     ],
 )
-def test_get_value_from_key(
+def test_get_value_from_key(set_config_key, get_config_key, expected_value, header, shared_datadir):
-    set_config_key, get_config_key, expected_value, header, shared_datadir
-):
     """
     Test the following:
 
@@ -155,11 +152,7 @@ def test_key_level_too_deep(header, shared_datadir):
         panaetius.set_config(config, key)
 
     # assert
-    assert (
+    assert str(key_error_too_deep.value) == f"Your key of {key} can only be 3 levels deep maximum."
-        str(key_error_too_deep.value)
-        == f"Your key of {key} can only be 2 levels deep maximum. "
-        f"You have 4"
-    )
 
 
 def test_get_value_missing_key_from_default(header, shared_datadir):
@@ -242,9 +235,7 @@ def test_missing_config_read_from_default(header, shared_datadir):
         ),
     ],
 )
-def test_missing_config_read_from_env_var(
+def test_missing_config_read_from_env_var(env_value, expected_value, header, shared_datadir):
-    env_value, expected_value, header, shared_datadir
-):
     # arrange
     config_path = str(shared_datadir / str(uuid4()))
     os.environ[f"{header.upper()}_MISSING_KEY_READ_FROM_ENV_VAR"] = env_value
@@ -271,10 +262,7 @@ def test_missing_config_read_from_env_var_invalid_python(header):
         panaetius.set_config(config, "invalid_python")
 
     # assert
-    assert (
+    assert str(invalid_python_exception.value) == "a string without quotes is not valid Python."
-        str(invalid_python_exception.value)
-        == "a string without quotes is not valid Python."
-    )
 
     # cleanup
     del os.environ[f"{header.upper()}_INVALID_PYTHON"]